Index

_

__getitem__() (mbfmri.data.tf_generator.DataGenerator method)

__len__() (mbfmri.data.tf_generator.DataGenerator method)

A

aggregate() (in module mbfmri.utils.report)

B

BIDSDataLoader (class in mbfmri.data.loader)

Binarizer (class in mbfmri.data.loader)

C

cluster_level_correction() (in module mbfmri.utils.coef2map) ComputationalModel (class in mbfmri.preprocessing.computational_modeling.bandit2arm_delta) (class in mbfmri.preprocessing.computational_modeling.bandit4arm2_kalman_filter) (class in mbfmri.preprocessing.computational_modeling.bandit4arm_2par_lapse) (class in mbfmri.preprocessing.computational_modeling.bandit4arm_4par) (class in mbfmri.preprocessing.computational_modeling.bandit4arm_lapse) (class in mbfmri.preprocessing.computational_modeling.bandit4arm_lapse_decay) (class in mbfmri.preprocessing.computational_modeling.bandit4arm_singleA_lapse) (class in mbfmri.preprocessing.computational_modeling.banditNarm_2par_lapse) (class in mbfmri.preprocessing.computational_modeling.banditNarm_4par) (class in mbfmri.preprocessing.computational_modeling.banditNarm_delta) (class in mbfmri.preprocessing.computational_modeling.banditNarm_kalman_filter) (class in mbfmri.preprocessing.computational_modeling.banditNarm_lapse) (class in mbfmri.preprocessing.computational_modeling.banditNarm_lapse_decay) (class in mbfmri.preprocessing.computational_modeling.banditNarm_singleA_lapse) (class in mbfmri.preprocessing.computational_modeling.bart_ewmv) (class in mbfmri.preprocessing.computational_modeling.bart_par4) (class in mbfmri.preprocessing.computational_modeling.cgt_cm) (class in mbfmri.preprocessing.computational_modeling.cra_exp) (class in mbfmri.preprocessing.computational_modeling.cra_linear) (class in mbfmri.preprocessing.computational_modeling.dbdm_prob_weight) (class in mbfmri.preprocessing.computational_modeling.dd_cs) (class in mbfmri.preprocessing.computational_modeling.dd_cs_single) (class in mbfmri.preprocessing.computational_modeling.dd_exp) (class in mbfmri.preprocessing.computational_modeling.dd_hyperbolic) (class in mbfmri.preprocessing.computational_modeling.dd_hyperbolic_single) (class in mbfmri.preprocessing.computational_modeling.gng_m1) (class in mbfmri.preprocessing.computational_modeling.gng_m2) (class in mbfmri.preprocessing.computational_modeling.gng_m3) (class in mbfmri.preprocessing.computational_modeling.gng_m4) (class in mbfmri.preprocessing.computational_modeling.igt_orl) (class in mbfmri.preprocessing.computational_modeling.igt_pvl_decay) (class in mbfmri.preprocessing.computational_modeling.igt_pvl_delta) (class in mbfmri.preprocessing.computational_modeling.igt_vpp) (class in mbfmri.preprocessing.computational_modeling.peer_ocu) (class in mbfmri.preprocessing.computational_modeling.prl_ewa) (class in mbfmri.preprocessing.computational_modeling.prl_fictitious) (class in mbfmri.preprocessing.computational_modeling.prl_fictitious_multipleB) (class in mbfmri.preprocessing.computational_modeling.prl_fictitious_rp) (class in mbfmri.preprocessing.computational_modeling.prl_fictitious_rp_woa) (class in mbfmri.preprocessing.computational_modeling.prl_fictitious_woa) (class in mbfmri.preprocessing.computational_modeling.prl_rp) (class in mbfmri.preprocessing.computational_modeling.prl_rp_multipleB) (class in mbfmri.preprocessing.computational_modeling.pst_gainloss_Q) (class in mbfmri.preprocessing.computational_modeling.ra_noLA) (class in mbfmri.preprocessing.computational_modeling.ra_noRA) (class in mbfmri.preprocessing.computational_modeling.ra_prospect) (class in mbfmri.preprocessing.computational_modeling.rdt_happiness) (class in mbfmri.preprocessing.computational_modeling.ts_par4) (class in mbfmri.preprocessing.computational_modeling.ts_par6) (class in mbfmri.preprocessing.computational_modeling.ts_par7) (class in mbfmri.preprocessing.computational_modeling.ug_bayes) (class in mbfmri.preprocessing.computational_modeling.ug_delta)

D

DataGenerator (class in mbfmri.data.tf_generator)

E

Explainer (class in mbfmri.utils.explainer)

F

fit() (mbfmri.models.elasticnet.MVPA_ElasticNet method) (mbfmri.models.mvpa_general.MVPA_Base method)

FitReporter (class in mbfmri.utils.report)

G

get_data() (mbfmri.data.loader.BIDSDataLoader method) get_map() (in module mbfmri.utils.coef2map)

get_voxel_mask() (mbfmri.data.loader.BIDSDataLoader method) get_weights() (mbfmri.models.elasticnet.MVPA_ElasticNet method) GLM (class in mbfmri.core.glm)

L

LatentProcessGenerator (class in mbfmri.preprocessing.events)

M

mbfmri module mbfmri.conf module mbfmri.core.engine module mbfmri.core.glm module mbfmri.core.mvpa module mbfmri.data.loader module mbfmri.data.tf_generator module mbfmri.models.elasticnet module mbfmri.models.mvpa_general module mbfmri.models.tf_cnn module mbfmri.models.tf_mlp module mbfmri.preprocessing.bold module mbfmri.preprocessing.computational_modeling module mbfmri.preprocessing.computational_modeling.bandit2arm_delta module mbfmri.preprocessing.computational_modeling.bandit4arm2_kalman_filter module mbfmri.preprocessing.computational_modeling.bandit4arm_2par_lapse module mbfmri.preprocessing.computational_modeling.bandit4arm_4par module mbfmri.preprocessing.computational_modeling.bandit4arm_lapse module mbfmri.preprocessing.computational_modeling.bandit4arm_lapse_decay module mbfmri.preprocessing.computational_modeling.bandit4arm_singleA_lapse module mbfmri.preprocessing.computational_modeling.banditNarm_2par_lapse module mbfmri.preprocessing.computational_modeling.banditNarm_4par module mbfmri.preprocessing.computational_modeling.banditNarm_delta module mbfmri.preprocessing.computational_modeling.banditNarm_kalman_filter module mbfmri.preprocessing.computational_modeling.banditNarm_lapse module mbfmri.preprocessing.computational_modeling.banditNarm_lapse_decay module mbfmri.preprocessing.computational_modeling.banditNarm_singleA_lapse module mbfmri.preprocessing.computational_modeling.bart_ewmv module mbfmri.preprocessing.computational_modeling.bart_par4 module mbfmri.preprocessing.computational_modeling.cgt_cm module mbfmri.preprocessing.computational_modeling.cra_exp module mbfmri.preprocessing.computational_modeling.cra_linear module mbfmri.preprocessing.computational_modeling.dbdm_prob_weight module mbfmri.preprocessing.computational_modeling.dd_cs module mbfmri.preprocessing.computational_modeling.dd_cs_single module mbfmri.preprocessing.computational_modeling.dd_exp module mbfmri.preprocessing.computational_modeling.dd_hyperbolic module mbfmri.preprocessing.computational_modeling.dd_hyperbolic_single module mbfmri.preprocessing.computational_modeling.gng_m1 module mbfmri.preprocessing.computational_modeling.gng_m2 module mbfmri.preprocessing.computational_modeling.gng_m3 module mbfmri.preprocessing.computational_modeling.gng_m4 module mbfmri.preprocessing.computational_modeling.igt_orl module mbfmri.preprocessing.computational_modeling.igt_pvl_decay module mbfmri.preprocessing.computational_modeling.igt_pvl_delta module mbfmri.preprocessing.computational_modeling.igt_vpp module mbfmri.preprocessing.computational_modeling.peer_ocu module mbfmri.preprocessing.computational_modeling.prl_ewa module mbfmri.preprocessing.computational_modeling.prl_fictitious module mbfmri.preprocessing.computational_modeling.prl_fictitious_multipleB module mbfmri.preprocessing.computational_modeling.prl_fictitious_rp module mbfmri.preprocessing.computational_modeling.prl_fictitious_rp_woa module mbfmri.preprocessing.computational_modeling.prl_fictitious_woa module mbfmri.preprocessing.computational_modeling.prl_rp module mbfmri.preprocessing.computational_modeling.prl_rp_multipleB module

mbfmri.preprocessing.computational_modeling.pst_gainloss_Q module mbfmri.preprocessing.computational_modeling.ra_noLA module mbfmri.preprocessing.computational_modeling.ra_noRA module mbfmri.preprocessing.computational_modeling.ra_prospect module mbfmri.preprocessing.computational_modeling.rdt_happiness module mbfmri.preprocessing.computational_modeling.ts_par4 module mbfmri.preprocessing.computational_modeling.ts_par6 module mbfmri.preprocessing.computational_modeling.ts_par7 module mbfmri.preprocessing.computational_modeling.ug_bayes module mbfmri.preprocessing.computational_modeling.ug_delta module mbfmri.preprocessing.computational_modeling.wcs_sql module mbfmri.preprocessing.events module mbfmri.utils.coef2map module mbfmri.utils.explainer module mbfmri.utils.report module MBGLM (class in mbfmri.core.glm) MBMVPA (class in mbfmri.core.mvpa) module mbfmri mbfmri.conf mbfmri.core.engine mbfmri.core.glm mbfmri.core.mvpa mbfmri.data.loader mbfmri.data.tf_generator mbfmri.models.elasticnet mbfmri.models.mvpa_general mbfmri.models.tf_cnn mbfmri.models.tf_mlp mbfmri.preprocessing.bold mbfmri.preprocessing.computational_modeling mbfmri.preprocessing.computational_modeling.bandit2arm_delta mbfmri.preprocessing.computational_modeling.bandit4arm2_kalman_filter mbfmri.preprocessing.computational_modeling.bandit4arm_2par_lapse mbfmri.preprocessing.computational_modeling.bandit4arm_4par mbfmri.preprocessing.computational_modeling.bandit4arm_lapse mbfmri.preprocessing.computational_modeling.bandit4arm_lapse_decay mbfmri.preprocessing.computational_modeling.bandit4arm_singleA_lapse mbfmri.preprocessing.computational_modeling.banditNarm_2par_lapse mbfmri.preprocessing.computational_modeling.banditNarm_4par mbfmri.preprocessing.computational_modeling.banditNarm_delta mbfmri.preprocessing.computational_modeling.banditNarm_kalman_filter mbfmri.preprocessing.computational_modeling.banditNarm_lapse mbfmri.preprocessing.computational_modeling.banditNarm_lapse_decay mbfmri.preprocessing.computational_modeling.banditNarm_singleA_lapse mbfmri.preprocessing.computational_modeling.bart_ewmv mbfmri.preprocessing.computational_modeling.bart_par4 mbfmri.preprocessing.computational_modeling.cgt_cm mbfmri.preprocessing.computational_modeling.cra_exp mbfmri.preprocessing.computational_modeling.cra_linear mbfmri.preprocessing.computational_modeling.dbdm_prob_weight mbfmri.preprocessing.computational_modeling.dd_cs mbfmri.preprocessing.computational_modeling.dd_cs_single mbfmri.preprocessing.computational_modeling.dd_exp mbfmri.preprocessing.computational_modeling.dd_hyperbolic mbfmri.preprocessing.computational_modeling.dd_hyperbolic_single mbfmri.preprocessing.computational_modeling.gng_m1 mbfmri.preprocessing.computational_modeling.gng_m2 mbfmri.preprocessing.computational_modeling.gng_m3 mbfmri.preprocessing.computational_modeling.gng_m4 mbfmri.preprocessing.computational_modeling.igt_orl mbfmri.preprocessing.computational_modeling.igt_pvl_decay mbfmri.preprocessing.computational_modeling.igt_pvl_delta mbfmri.preprocessing.computational_modeling.igt_vpp mbfmri.preprocessing.computational_modeling.peer_ocu mbfmri.preprocessing.computational_modeling.prl_ewa mbfmri.preprocessing.computational_modeling.prl_fictitious mbfmri.preprocessing.computational_modeling.prl_fictitious_multipleB mbfmri.preprocessing.computational_modeling.prl_fictitious_rp mbfmri.preprocessing.computational_modeling.prl_fictitious_rp_woa mbfmri.preprocessing.computational_modeling.prl_fictitious_woa mbfmri.preprocessing.computational_modeling.prl_rp mbfmri.preprocessing.computational_modeling.prl_rp_multipleB mbfmri.preprocessing.computational_modeling.pst_gainloss_Q mbfmri.preprocessing.computational_modeling.ra_noLA mbfmri.preprocessing.computational_modeling.ra_noRA mbfmri.preprocessing.computational_modeling.ra_prospect mbfmri.preprocessing.computational_modeling.rdt_happiness mbfmri.preprocessing.computational_modeling.ts_par4 mbfmri.preprocessing.computational_modeling.ts_par6 mbfmri.preprocessing.computational_modeling.ts_par7 mbfmri.preprocessing.computational_modeling.ug_bayes mbfmri.preprocessing.computational_modeling.ug_delta mbfmri.preprocessing.computational_modeling.wcs_sql mbfmri.preprocessing.events mbfmri.utils.coef2map mbfmri.utils.explainer mbfmri.utils.report MVPA_Base (class in mbfmri.models.mvpa_general) MVPA_CNN (class in mbfmri.models.tf_cnn) MVPA_CV (class in mbfmri.models.mvpa_general) MVPA_ElasticNet (class in mbfmri.models.elasticnet) MVPA_MLP (class in mbfmri.models.tf_mlp)

N

Normalizer (class in mbfmri.data.loader)

O

on_epoch_end() (mbfmri.data.tf_generator.DataGenerator method)

P

PostReporter (class in mbfmri.utils.report)

predict() (mbfmri.models.elasticnet.MVPA_ElasticNet method) (mbfmri.models.mvpa_general.MVPA_Base method)

R

reconstruct() (in module mbfmri.utils.coef2map) report() (mbfmri.models.elasticnet.MVPA_ElasticNet method) reset() (mbfmri.models.elasticnet.MVPA_ElasticNet method) (mbfmri.models.mvpa_general.MVPA_Base method) (mbfmri.models.tf_cnn.MVPA_CNN method) (mbfmri.models.tf_mlp.MVPA_MLP method) run() (mbfmri.core.glm.GLM method) (mbfmri.core.glm.MBGLM method) (mbfmri.core.mvpa.MBMVPA method) (mbfmri.models.mvpa_general.MVPA_CV method) (mbfmri.preprocessing.bold.VoxelFeatureGenerator method) (mbfmri.preprocessing.events.LatentProcessGenerator method) (mbfmri.utils.report.FitReporter method) (mbfmri.utils.report.PostReporter method)

run_firstlevel() (mbfmri.core.glm.GLM method) run_mbfmri() (in module mbfmri.core.engine) run_mbglm() (in module mbfmri.core.glm) run_mbmvpa() (in module mbfmri.core.mvpa) run_secondlevel() (mbfmri.core.glm.GLM method)

S

set_computational_model() (mbfmri.preprocessing.events.LatentProcessGenerator method)

summary() (mbfmri.preprocessing.bold.VoxelFeatureGenerator method) (mbfmri.preprocessing.events.LatentProcessGenerator method)

V

VoxelFeatureGenerator (class in mbfmri.preprocessing.bold)